FastQCFastQC Report
Sun 21 May 2023
EGAF00007941552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473133
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17870.3776950667148561No Hit
GATACGGTCACAGTTCAGGGTCAGTGGGCAGGTATCTGCCAGTT13390.2830071037107959No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG8570.18113300065732046No Hit
CGGTGCAACTTTGGCCGTTACGGTCACGTTGCCGGTTTTGGTAA7770.16422443583516685No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7590.16042000875018228No Hit
TTTGATGCCGGAGTACGCCAGGCCCCAAACTGCATCGGTGTGAC7000.14794994219384403No Hit
GTCTACAACGCGGAAAGTCGCATCCGGAGCAATCATTTTAACGT6810.14393415804858253No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6190.1308300203114135No Hit
GTCTGCGGTACCCGGGATGGTGTCGTTAACGTCAGTGTAGGTCA6120.12935052088947505No Hit
AGCAGAGTGACGCTGCGGCAGCGGGTGAACATAGATCAGCGGAC6050.12787102146753662No Hit
TGCCATGCCACGCAGCGCGATGGCCGCAGCAATCTGGTCGTCCT5870.12406659438255205No Hit
GTGTTCGGTGCCGATACGTGGGGAAGCGAAGCGCATCGCTTCCG5860.12385523732227513No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5830.12322116614144438No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5680.12005081023729058No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5580.11793723963452138No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5230.11053974252482918No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4820.10187410305347545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)