FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506875
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19650.38766954377311963No Hit
GATACGGTCACAGTTCAGGGTCAGTGGGCAGGTATCTGCCAGTT14240.2809371146732429No Hit
CGGTGCAACTTTGGCCGTTACGGTCACGTTGCCGGTTTTGGTAA8530.16828606658446363No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7850.15487053020961775No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7780.15348951911220715No Hit
TTTGATGCCGGAGTACGCCAGGCCCCAAACTGCATCGGTGTGAC7510.1481627620221948No Hit
GTCTACAACGCGGAAAGTCGCATCCGGAGCAATCATTTTAACGT7120.14046855733662145No Hit
GTCTGCGGTACCCGGGATGGTGTCGTTAACGTCAGTGTAGGTCA6620.13060419235511714No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6450.12725030826140568No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6440.1270530209617756No Hit
GTGTTCGGTGCCGATACGTGGGGAAGCGAAGCGCATCGCTTCCG6270.12369913686806411No Hit
AGCAGAGTGACGCTGCGGCAGCGGGTGAACATAGATCAGCGGAC6220.12271270036991369No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5970.11778051787916152No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5970.11778051787916152No Hit
TGCCATGCCACGCAGCGCGATGGCCGCAGCAATCTGGTCGTCCT5890.11620221948212084No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5660.11166461159062885No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG5280.10416769420468558No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5260.1037731196054254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)