FastQCFastQC Report
Wed 31 May 2023
EGAF00007941555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506875
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20080.3961528976572133No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16690.3292725030826141No Hit
GTGGGTCTGATCCCGCGTAACGGCGTTGACC15370.30323057953144267No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13490.26614056720098644No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12150.23970406905055486No Hit
GATGGTAGCCCAGTAGTGGGCACCACTGACA8420.16611590628853268No Hit
GGTGAACAGTGCTTCAGCGGTGGCATTGACG8280.16335388409371146No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8130.16039457459926018No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT7630.15053020961775584No Hit
GCAGCGTGCCGTGCACTGGGCGAAGCAGGTG7550.14895191122071516No Hit
ACCGCAGCTGACGCGGCGGAACAGGATGGCA6950.13711467324291No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6470.12764488286066583No Hit
CCGCTGGTAACTGATCTGCCGCACTATGTCG6450.12725030826140568No Hit
GGTCTGAAAACCTACGCGTGCGAGGTGACTG6360.1254747225647349No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA6150.1213316892725031No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5990.1181750924784217No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5760.11363748458692972No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5470.10791615289765721No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5180.10219482120838472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)