FastQCFastQC Report
Wed 31 May 2023
EGAF00007941557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526083
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58201.1062893117625925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52220.9926190353993571No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA46310.8802793475554238No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21790.41419319765132123No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20120.3824491572622571No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14680.2790434209050663No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13820.2626961905250692No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13310.25300190274158263No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11990.22791080494902896No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC11380.2163156764236822No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11280.21441483568182207No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10450.19863785752438304No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT10440.198447773450197No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC10350.1967370167825229No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9910.18837331751833836No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG9230.1754476004736895No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9140.17373684380601542No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9050.17202608713834128No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8730.1659433967643889No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8040.15282759564555404No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7880.14978625045857782No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7810.14845566193927576No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7620.1448440645297415No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7450.14161263526857928No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7410.14085229897183524No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7390.14047213082346321No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7280.13838120600741707No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7250.13781095378485905No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7220.137240701562301No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6970.1324885997076507No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6440.12241414377579204No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC5930.1127198559923054No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5900.11214960376974736No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5850.11119918339881729No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5630.10701733376672502No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5620.10682724969253901No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5580.10606691339579495No Hit
GGTCTGCAATCTTCCTCTTACCCAGGTTATG5320.10112472746695864No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5280.10036439117021459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)