FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561732
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20610.3669009420862618No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15320.2727279200757657No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11450.20383385671458987No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11230.1999173983323008No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG10770.1917284398966055No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10700.19048229404769534No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7840.1395683350779375No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7820.13921229340682034No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7480.13315958499782815No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT7140.12710687658883596No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6680.11891791815314065No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6160.10966083470409377No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5940.10574437632180471No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)