FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561732
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21810.388263442353293No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19940.35497354610383597No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13120.233563336252875No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12660.22537437781717973No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG11810.21024260679469922No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11720.20864041927467192No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11110.1977811483055977No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9690.17250218965627737No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8510.1514957310603633No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8400.14953750186921877No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8290.14757927267807425No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7900.14063646009128908No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7030.12514864739769144No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7000.12461458489101565No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6790.12087614734428517No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6090.10841468885518361No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5830.10378614713066017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)