FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486790
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48420.9946794305552703No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28800.5916308880626142No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24190.4969288604942583No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12700.2608927874442778No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11540.23706321000842254No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA10390.21343905996425563No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG9720.19967542472113234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9130.18755520861151626No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8940.1836520881694365No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6780.13927977156474045No Hit
GTCCCGGCGTTCTCCCGCGGTCGTTGCTGTA6510.13373323198915343No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5300.1088765175948561No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4910.10086484931900819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)