FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506175
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28790.5687756210796661No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24570.4854052452215143No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20570.4063811922753988No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18180.35916432064009485No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17000.33585222502099077No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16830.3324937027707809No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14810.29258655603299255No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13400.26473057736948685No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12630.2495184471773596No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11930.2356892379117894No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10210.20170889514495974No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC10060.19874549315948042No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9480.18728700548229368No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9290.18353336296735318No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8990.17760655899639455No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8770.17326023608435817No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8550.16891391317232185No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8490.1677285523781301No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC7950.1570603052304045No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7690.151923741788907No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC7660.15133106139181113No Hit
CGCCGCACGCAGGCTTTCGGCGTCTGGAACGCCGGCAGATGCCT7500.14817009927396652No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7340.1450091371561219No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6950.13730429199387564No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6890.1361189311996839No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6340.12525312391959303No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6200.12248728206647899No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6030.11912875981626907No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5790.11438731663950216No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5770.11399219637477156No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5620.11102879438929224No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC5590.11043611399219637No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5190.10253370869758482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)