FastQCFastQC Report
Sun 21 May 2023
EGAF00007941579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506175
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37930.74934558206154No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32920.6503679557465303No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30010.5928779572282313No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20830.4115177557168963No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19790.3909715019509063No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18850.37240084950856917No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15900.314120610460809No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13600.2686817800167926No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13500.26670617869313973No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12350.24398676347113152No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12250.24201116214747864No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT10490.20724057885118785No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10420.2058576579246308No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9640.1904479676001383No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9430.18629920482046725No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9420.18610164468810195No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9120.1801748407171433No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9060.17898947992295156No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8240.16278954906899787No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC8140.16081394774534497No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8130.1606163876129797No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT8100.16002370721588383No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8040.15883834642169212No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7990.15785054575986568No Hit
CATGGTGAAGGCTTCCTGAGCGAGGGTAAAG7800.15409690324492517No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7540.14896033980342768No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC7390.14599693781794834No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG7270.14362621622956487No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7090.14007013384698966No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6830.13493357040549217No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6490.12821652590507238No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6230.12307996246357486No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5900.11656047809552032No Hit
GCTCCGACCTGCAACATCCGTGTTACCGTTT5740.1133995159776757No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5280.10431174988887243No Hit
CAGGAAGAAACCGTCACTCTGCACTGCGAGG5200.10273126882995012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)