FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489286
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48480.9908315382005616No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15180.3102479940157699No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14940.3053428873910147No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12120.2477078845501404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6640.13570794995156207No Hit
ATCGAAACCGTCGGTGACATCGTGTCCGGTC5880.12017511230650375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5690.11629190289523918No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5030.10280285967716224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)