FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525211
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA59381.1305932282454099No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27490.5234086871752496No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC27360.5209334914919909No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24090.4586728000746366No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15050.2865515002541836No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG13580.2585627490665656No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12060.2296219995392328No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10120.19268446395829486No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT9980.19001886860709316No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9970.18982846893915017No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9800.18659167458411952No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC9490.18068928487788716No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7590.14451334796872115No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6700.127567777521796No Hit
CGTGCTCGTGCAGTTATTGACCTGGCAGACG6120.11652459678110322No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5920.11271660342224363No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5900.11233580408635767No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA5810.11062220707487086No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5750.10947980906721298No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5730.10909900973132702No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5720.10890861006338404No Hit
GAAAAAGCTATCCCTACCCTGGCAGACGCAG5430.10338701969303767No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5260.10015022533800699No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5260.10015022533800699No Hit

[OK]Adapter Content

Adapter graph