FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520314
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT38570.7412831482527857No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC32960.6334636392639829No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24400.4689475970279485No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA23510.45184254123471596No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA20800.39975860730251345No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG18030.34652152354155374No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT17560.337488516549622No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT17380.33402906706335017No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16630.31961469420388455No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16160.3105816872119528No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16040.3082753875544383No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT15870.3050081297062927No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT14500.2786778752830022No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14060.27022144320544905No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13950.2681073351860607No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA13520.25984309474663375No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13260.25484611215535236No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12510.24043173929588674No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT12490.2400473560196343No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12000.23062996575145006No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11190.2150624430632272No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10460.201032453480014No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10430.20045587856563538No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9870.1896931468305677No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9840.18911657191618905No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8440.1622097425785199No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8270.15894248473037437No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7620.1464500282521708No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7430.14279838712777285No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6830.13126688884020032No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6780.1303059306495693No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6700.12876839754455963No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA6690.1285762059064334No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT6610.12703867280142375No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6600.12684648116329755No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6440.12377141495327822No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6180.11877443236199679No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5850.11243210830383192No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5660.10878046717943395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)