FastQCFastQC Report
Sun 21 May 2023
EGAF00007941595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406154
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41871.0308897610266057No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14950.3680869817852342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6130.1509279731333435No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6070.14945070096564358No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5670.13960221984764398No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4640.11424238096879509No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4200.10340905173899556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)