FastQCFastQC Report
Wed 31 May 2023
EGAF00007941601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386049
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39201.0154151416011958No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31930.8270970783501577No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG13400.347106196363674No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12000.31084136987791705No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7130.18469158060246238No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6470.16759530525917696No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6180.16008330548712726No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5480.14195089224424878No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5040.13055337534872516No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4860.1258907548005564No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4280.11086675525645708No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4240.10983061735686402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)