FastQCFastQC Report
Wed 31 May 2023
EGAF00007941607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408720
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39720.9718144450968879No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17150.41960266196907414No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17150.41960266196907414No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13630.3334801330984537No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11240.27500489332550404No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10250.250782932080642No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9780.23928361714621255No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9140.2236249755333725No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8900.21775298492855746No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8850.21652965355255432No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8790.21506165590135057No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7780.1903503621060873No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7520.18398903895087101No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7260.17762771579565473No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6890.16857506361323157No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6810.16661773341162656No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6760.16539440203562342No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6370.15585241730279897No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5970.1460657662947739No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5830.14264043844196517No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5710.13970444313955765No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5340.13065179095713447No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5140.12575846545312194No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5070.12404580152671756No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4970.12159913877471129No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4930.1206204736739088No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4300.10520649833626933No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4280.10471716578586807No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4100.1003131728322568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)