FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391247
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39641.0131707080182084No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11790.3013441636613188No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7710.1970622138955698No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7440.1901612025140129No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7230.1847937492172464No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6040.15437818053556962No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4940.12626294898107845No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4860.12421820486802455No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4740.1211510886984437No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4540.11603922841580894No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4320.11041618210491072No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4230.10811584497772506No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4210.10760465894946158No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4120.10530432182227596No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG3940.10070364756790467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)