FastQCFastQC Report
Sun 21 May 2023
EGAF00007941610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390277
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17720.4540364920300197No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG17150.4394314807175417No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12980.3325842926946758No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11840.30337427006971973No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11310.2897941718318015No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10670.2733955626388437No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9500.24341685520796766No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9090.23291149619372908No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7230.1852530382266954No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6960.17833487497341632No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6220.15937398309405884No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6070.15553055906445934No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5920.15168713503485987No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5910.1514309067662199No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5440.13938817814014148No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5060.1296515039318228No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4940.1265767647081432No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT4880.1250393950963034No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4870.12478316682766344No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4770.12222088414126377No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4600.11786500357438434No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT4360.11171552512702516No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4300.11017815551518538No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4030.10325999226190628No Hit
TTCTTTATCTGGAGCGTGAACACCGTCGACGCTCGGCTGCAGGG3940.1009539378441466No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG3920.10044148130686666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)