FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390277
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38960.9982653346213075No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26650.6828483359255093No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17620.45147420934362004No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT16980.4350756001506622No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15170.3886982835268284No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13890.35590106514091274No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12370.3169543683076379No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12370.3169543683076379No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9390.24059834425292806No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8100.20754489759837244No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7840.2008829626137333No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7230.1852530382266954No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6590.1688544290337376No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6410.1642423201982182No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6290.1611675809745386No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5420.13887572160286155No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5300.13580098237918195No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4980.12760167778270304No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4900.12555185163358332No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4840.12401448202174353No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4810.12324579721582363No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA4750.12170842760398383No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4630.11863368838030425No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4540.11632763396254456No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4490.11504649261934471No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC4070.10428490533646614No Hit
AAATCTGACGCAGTAAAAGCCCTGAAGGAAC4030.10325999226190628No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3920.10044148130686666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)