FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428775
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10750.25071424406740134No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8860.20663518162206285No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8610.2008046178065419No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7770.18121392338639147No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6650.15509299749285754No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6560.15299399451927No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6270.1462305404932657No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5430.12663984607311526No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5420.12640662352049445No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5150.1201096145997318No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4970.1159116086525567No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4960.11567838609993586No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG4700.10961459973179406No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4600.10728237420558567No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4590.10704915165296484No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4570.10658270654772316No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4400.10261792315316891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)