FastQCFastQC Report
Wed 31 May 2023
EGAF00007941614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435839
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11440.26248224688474414No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9020.20695715619758673No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9010.20672771367408604No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8210.18837231179403405No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6380.146384329993415No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6130.14064826690589874No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6120.1404188243823981No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5960.13674774400638767No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5650.1296350257778675No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5500.12619338792535775No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5420.12435784773735256No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5030.11540958932082718No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5000.11472126175032524No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4980.11426237670332394No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4820.11059129632731352No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4780.10967352623331092No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG4610.10577300333379985No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4520.103708020622294No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4400.10095471034028619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)