FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435839
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43731.0033521552683444No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12070.2769371258652851No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11340.26018782164973764No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8810.20213886320407307No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8480.19456725992855162No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6770.15533258840994035No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6720.15418537579243713No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6140.14087770942939937No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6120.1404188243823981No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6100.1399599393353968No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6000.1376655141003903No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5400.12389896269035126No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5390.1236695201668506No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5100.11701568698533173No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5060.11609791689132914No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4960.11380349165632264No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4810.11036185380381289No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4750.10898519866280898No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4550.10439634819279597No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4540.10416690566929532No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG4470.10256080800479077No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT4450.10210192295778947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)