FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448845
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13390.29832124675556154No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG12900.28740433780035424No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11610.25866390402031886No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11510.2564359634172153No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT11500.25621316935690497No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10570.23549332174804222No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10450.23281979302431796No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10290.22925508805935235No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9580.21343670977731735No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9190.2047477414252136No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8980.2000690661586962No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8090.18024039479107487No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7810.174002161102385No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7780.17333377892145396No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7760.17288819080083323No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7620.16976907395648833No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6830.1521683431919705No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6750.1503859907094877No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA6370.1419198164176943No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5720.1274382024975214No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5720.1274382024975214No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5600.12476467377379719No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5220.11629849948200381No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4700.1047132083458655No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4600.10248526774276198No Hit
AGATTCCGCCTTCAGACGACCACGGGTCATAACGCCCGCCGTGC4560.10159409150152056No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4510.1004801211999688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)