FastQCFastQC Report
Wed 31 May 2023
EGAF00007941619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448845
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29650.6605843888201941No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20880.46519399792801525No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14770.3290668270783901No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC14030.31258006661542403No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12720.2833940447147679No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11800.2628969911662155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11540.2571043455981463No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11200.24952934754759437No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10800.24061758513518028No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9750.21722420880259333No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9000.20051465427931692No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8990.20029186021900655No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8880.1978411255555927No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8370.18647862847976474No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7920.17645289576579887No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7850.17489333734362641No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7560.1684323095946262No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7100.15818378282035No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7050.15706981251879826No Hit
GCGCTGTCTTGCGTGGGTGCAGCTGTTGCCC6450.14370216890017712No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6400.14258819859862534No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6090.13568158272900444No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5540.12342790941193507No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4880.10872350143145183No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4830.10760953112990007No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4700.1047132083458655No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4560.10159409150152056No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4540.10114850338089987No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4510.1004801211999688No Hit
GACGATGTGTGGACCAGCGGTTCTGACTCCG4490.1000345330793481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)