FastQCFastQC Report
Wed 31 May 2023
EGAF00007941621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451780
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19240.4258709991588826No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14210.3145336225596529No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12970.28708663508787463No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10910.24148922041701712No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10750.2379476736464651No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10350.229093806720085No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9760.21603435300367435No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8230.18216831201027048No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8020.17752003187392093No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7950.17597060516180443No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7780.17220771171809288No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7700.17043693833281687No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7190.15914825800168222No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7070.1564920979237682No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6650.1471955376510691No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6520.14431803089999556No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6380.14121917747576254No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6240.13812032405152952No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6020.13325069724202046No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5910.13081588383726592No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5780.1279383770861924No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5570.12329009694984285No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5560.12306875027668335No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5530.12240471025720483No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5360.11864181681349328No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5150.11399353667714374No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5110.11310814998450575No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4750.10513966975076365No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4730.10469697640444464No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4650.10292620301916862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)