FastQCFastQC Report
Sun 21 May 2023
EGAF00007941625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434481
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43320.9970516547328883No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25310.582534103907881No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23240.5348910539241071No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC21680.49898614668995883No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11230.2584693001535165No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9590.2207231156253093No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9220.21220720814028693No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9220.21220720814028693No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9150.2105960905079854No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7150.16456415815651318No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7060.1624927212006969No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6690.15397681371567457No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5570.12819893159885012No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5230.12037350309909985No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5130.11807190648152623No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4780.11001631832001861No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4550.10472264609959929No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4500.1035718477908125No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4370.10057977218796679No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)