FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423497
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11860.28004920932143557No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9810.23164272710314357No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9550.22550336838277485No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7980.18843108687900978No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7450.17591624025671965No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6080.14356654238400743No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5890.1390800879345072No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5880.13884395875295455No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5520.1303433082170594No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5150.12160652849961155No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5000.1180645907763219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)