FastQCFastQC Report
Sun 21 May 2023
EGAF00007941627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423497
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24370.575446815443793No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16040.3787512072104407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12580.2970505103932259No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10940.25832532461859237No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10480.2474633822671707No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9610.22692014347209072No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6160.1454555758364286No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5790.13671879611898077No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5150.12160652849961155No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4910.11593942814234812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)