FastQCFastQC Report
Wed 31 May 2023
EGAF00007941629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391390
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39761.0158665269935359No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21790.5567336927361455No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10800.27593959988758016No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10540.2692966095199162No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9540.24374664656736247No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9380.23965865249495388No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9300.23761465545874957No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6340.16198676511919058No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6220.15892076956488413No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5520.14103579549809653No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5120.13081581031707504No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4950.1264723166151409No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4910.12545031809703877No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4480.11446383402744066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)