FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393757
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC17470.4436746521331685No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10850.27555065687721103No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10500.2666619260102043No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8820.2239960178485716No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8370.2125676495909914No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7810.1983456802037805No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6620.16812399525595734No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6200.15745751821554918No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5200.13206114430981544No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5040.12799772448489805No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4770.12114070353034993No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4750.12063277605223527No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4460.11326782761957248No Hit
GGTGTCAGAAACTTTCGGGACTTCCGGGCTTTTAGGAGCCTCCG4130.10488702423068035No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4100.10412513301350833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)