FastQCFastQC Report
Wed 31 May 2023
EGAF00007941631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393757
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39070.9922363284970173No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG18010.4573886940422646No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15480.3931358680607583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10670.27097930957417904No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9380.23821798723578247No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8810.22374205410951425No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8100.2057106286364433No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7290.18513956577279894No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6380.16202886551858126No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5870.14907671482665705No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5410.13739438283001953No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5290.1343468179613315No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5020.12748979700678337No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4840.1229184497037513No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4750.12063277605223527No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4610.11707728370543254No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4450.11301386388051515No Hit
CCGAAAGTGTCCGACACCCCGAAAGCCCCGG4390.11149008144617112No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4320.10971233527276975No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4070.10336324179633632No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG3970.10082360440576295No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT3950.10031567692764826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)