FastQCFastQC Report
Wed 31 May 2023
EGAF00007941632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373700
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15560.41637677281241636No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13850.3706181428953706No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12910.34546427615734543No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12650.3385068236553385No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10720.28686111854428686No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10370.2774953170992775No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10040.26866470430826866No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8410.22504682900722503No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7320.19587904736419587No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7040.18838640620818836No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6900.18464008563018464No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6750.18062617072518064No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6720.17982338774417983No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6630.17741503880117743No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6330.16938720899116938No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6030.16135937918116136No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5300.14182499331014184No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4950.13245919186513247No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4600.12309339042012309No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4450.11907947551511908No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT4400.11774150388011774No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4020.10757291945410759No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4000.10703773080010703No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC3910.10462938185710463No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA3760.10061546695210061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)