FastQCFastQC Report
Sun 21 May 2023
EGAF00007941633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373700
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35900.9606636339309607No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29930.800909820711801No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26330.7045758629917046No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15460.41370082954241366No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15330.41022210329141023No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15220.4072785656944073No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13090.3502809740433503No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8750.23414503612523416No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7540.20176612255820175No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7390.19775220765319776No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6960.18624565159218626No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6860.18356970832218358No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6570.1758094728391758No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6440.17233074658817232No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5750.15386673802515385No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5260.14075461600214076No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4990.13352956917313352No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4840.1295156542681295No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4500.12041744715012041No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4490.12014985282312014No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4100.1097136740701097No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4020.10757291945410759No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3930.10516457051110517No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT3820.10222103291410221No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3770.10088306127910088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)