FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451577
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24690.5467506095306006No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20620.45662201573596534No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19910.440899337211594No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15510.34346301959577213No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12700.2812366440274859No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12120.2683927657963094No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9620.21303122169641056No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8220.18202875700046725No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7800.17272801759168427No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7360.16298438583010208No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6200.13729662936774903No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5250.11625924260978747No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4960.10983730349419922No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4620.10230813349661298No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4540.10053656408541621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)