FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451577
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA51021.1298183919907345No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27870.6171704936256718No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24970.5529511024697892No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16010.3545353284157519No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11300.25023417933154257No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10470.23185414669037616No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8570.1897793731744531No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8560.1895579269980535No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8050.17826417200167413No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7020.15545521583251584No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6440.14261133760133932No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6220.1377395217205482No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5210.11537345790418911No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4790.1060727184954061No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4700.10407970290780974No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4690.10385825673141014No Hit
CTGGACGCACTGGGCAACGATCGCATCGCGT4530.10031511790901662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)