FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422836
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14730.3483620126952294No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14660.34670652451541495No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13610.32187420181819903No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG11660.275757031094798No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11500.27197305811236505No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT11480.27150006148956096No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11030.2608576374764684No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10650.25187070164319025No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8940.21142949039343858No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8650.20457103936277893No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8600.20338854780576868No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8150.19274612379267614No Hit
TTCCATGGCTTTAGCAGTGGTAGACGCCAGAACCATACGGTTTT7790.18423218458220209No Hit
TTCCATAGCTTTTGCGGTAGTGCTGGCCAGAACCATGCGGTTTT7270.17193427238929515No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6880.16271083824461494No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6580.15561588890255323No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6180.14615595644647097No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5780.13669602399038872No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT5710.1350405358105743No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG5680.13433104087636816No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT5530.1307835662053373No Hit
CAGGACCATACGGTTTTCGTGACGGATCAGCGGGTTGGTAGTGG5520.13054706789393525No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5150.12179663037205915No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5140.12156013206065708No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG5120.12108713543785296No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5110.12085063712645092No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5100.12061413881504886No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT5080.12014114219224474No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA5020.1187221523238324No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4660.11020821311335836No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4550.10760673168793573No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4350.1028767654598946No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG4330.1024037688370905No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT4260.10074828065727612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)