FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422836
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23860.5642849710053071No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16540.3911682070590016No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16400.3878572306993728No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16020.37887029486609464No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14890.35214598567766225No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG12240.28947393315611725No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG11720.2771760209632103No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11720.2771760209632103No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11280.26677009526151985No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11000.26014814254226226No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10720.2535261898230047No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10090.23862679620467508No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9240.2185244397355003No Hit
GCTGTTACCACCGAAGTCGCATTCGGTCTGG7960.18825265587603704No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7960.18825265587603704No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7590.17950221835416094No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG7470.17666423861733627No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6670.15774437370517175No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG6150.1454464615122648No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5980.14142599021842983No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA5960.14095299359562571No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5780.13669602399038872No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5780.13669602399038872No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC5680.13433104087636816No Hit
ATGGGTCTGATCTACAACCGTATGGGCACGG5480.129601074648327No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC5240.12392511517467766No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG5060.11966814556944062No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5010.11848565401243036No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5010.11848565401243036No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4760.11257319622737894No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4660.11020821311335836No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4470.10571474519671929No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4460.10547824688531725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)