FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420056
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18620.443274230102653No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13050.31067286266593025No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11530.274487211228979No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10950.2606795284438265No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10460.24901441712533567No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10450.24877635362903994No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9420.22425581351057955No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9400.22377968651798807No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9280.22092292456243928No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8900.21187651170320146No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8370.1992591463995277No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8150.19402174948102158No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8030.19116498752547278No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7580.18045213019216486No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7050.16783476488849106No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6990.16640638391071666No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6930.1649780029329423No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6880.1637876854514636No Hit
GAAATCCGGCAGGTCGGTGGAGCAGCTGAAAACGTAGCCACCAG6350.15117032014778983No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6150.14640905022187517No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6140.14617098672557943No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5660.13474393890338432No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5640.13426781191079284No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5630.1340297484144971No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5420.12903041499228673No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5250.12498333555525928No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5150.12260270059230198No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4930.11736530367379588No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4920.11712724017750015No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4840.11522273220713429No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4810.11450854171824709No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4720.11236597025158551No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4700.11188984325899404No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG4420.10522406536271353No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT4410.10498600186641782No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4350.10355762088864343No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4300.10236730340716475No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT4250.10117698592568611No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT4220.10046279543679891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)