FastQCFastQC Report
Wed 31 May 2023
EGAF00007941643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420056
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40790.9710610013902908No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23600.5618298512579275No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18630.4435122935989487No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15210.3620945778658084No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13360.31805283105109794No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12740.30329289428076256No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12710.30257870379187535No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10990.2616317824290094No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10610.2525853695697717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10510.2502047346068143No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10470.2492524806216314No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10200.24282476622164662No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9460.22520806749576244No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8590.20449654331803377No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8450.20116365436989356No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8440.20092559087359782No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7860.18711790808844536No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7560.17997600319957338No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7050.16783476488849106No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6810.1621212409773935No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6770.16116898699221055No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6490.15450320909593007No Hit
TCTAGCTCTAGCGGCTTTTCTGCCATCGCAG6310.15021806616260688No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6030.1435522882663264No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5990.14260003428114346No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5600.13331555792560992No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5270.12545946254785076No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5230.12450720856266784No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5150.12260270059230198No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5100.12141238311082331No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5080.12093625611823186No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5030.1197459386367532No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4860.11569885919972575No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4820.11474660521454282No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4690.11165177976269831No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4680.11141371626640258No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4660.11093758927381112No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4640.11046146228121964No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG4560.1085569543108538No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4400.10474793837012208No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4260.10141504942198185No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4250.10117698592568611No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4210.10022473194050317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)