FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410694
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7330.17847838049740194No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6760.1645994341285726No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6300.15339888091864015No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5930.1443897402932597No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5520.13440663851918946No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5430.13221522593463747No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5300.1290498522013957No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4490.10932713894042767No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4430.107866197217393No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4310.10494431377132366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)