FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410694
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10420.2537168792336874No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9070.2208456904654073No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8080.1967401520353353No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7150.17409555532829796No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6720.16362547297988284No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6660.16216453125684815No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6430.15656425465188195No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6340.15437284206732993No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5900.14365926943174237No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5720.13927644426263835No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5450.13270220650898235No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5440.1324587162218099No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4700.11444043497104901No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4540.1105445903762899No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4150.10104846917656454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)