FastQCFastQC Report
Wed 31 May 2023
EGAF00007942154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473357
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA50591.0687493794324368No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26450.5587748781575006No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25450.5376491738793342No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21050.44469607505540215No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC17990.38005141996421304No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16980.358714458643265No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG16680.3523767473598151No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG16410.34667280720471016No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13350.2820281521135211No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG12520.264493817562643No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9170.19372270823078563No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8130.1717519757814926No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7270.15358387010226954No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6930.14640113064769297No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6640.14027467640702473No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6600.13942964823589807No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6590.1392183911931164No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5680.119994000299985No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5490.11598011648713338No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5180.10943114816090183No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5070.10710732069030351No Hit

[OK]Adapter Content

Adapter graph