FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472673
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46380.9812280371419565No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15570.32940320263691814No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11940.25260592418014144No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10680.22594901760836775No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9940.21029337406621493No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7420.15697956092266746No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6740.14259329388393244No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA6700.14174704288165393No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6550.13857360162310942No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6150.1301110916003241No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6100.12905327784747594No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5530.1169942010650069No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5260.1112820067996268No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC4960.10493512428253783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)