FastQCFastQC Report
Sun 21 May 2023
EGAF00007942164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512213
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA16940.33072178956801174No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13850.2703953238203638No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11010.21494964009113396No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10960.2139734836874503No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8790.17160829576758108No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7600.1483757733599108No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6490.12670510119813436No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6140.11987200637234899No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6130.11967677509161227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)