FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495894
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30840.621907101114351No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29790.6007332212125979No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26870.5418496694858176No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14480.2919978866451298No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT14330.28897304665916507No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14200.28635151867132896No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12810.258321334801389No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11750.23694579890057146No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC11530.23250936692115654No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9800.19762287908302983No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9520.19197651110922898No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9330.188145047127007No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8280.1669711672252538No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7770.15668671127297365No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7740.15608174327578073No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7670.1546701512823305No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7520.15164531129636577No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7410.14942709530665826No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7270.14660391131975783No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7260.14640225532069354No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7150.14418403933098606No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7090.14297410333660016No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6830.13773104736092795No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6730.13571448737028477No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6570.13248799138525572No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6560.1322863353861914No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6520.13147971138993414No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6450.13006811939648394No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6380.1286565274030337No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5880.11857372744981791No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5700.11494391946666022No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5500.11091079948537388No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5210.10506277551250871No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5180.10445780751531578No Hit
GGACAGAGAGGCGGTTTTAGCGTTGGACAGTTTGAAGGTTGCGG5020.10123131153028672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)