FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459381
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC39440.8585466094592505No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT38540.8389550286145921No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC29630.6449983782524745No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28680.6243183762497796No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG21780.47411625644073224No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT18130.3946615119040622No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC18100.39400845920924027No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16070.3498185601929553No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14800.3221726627788263No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA14290.3110707669668532No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13220.2877785541848705No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11830.25752044599145374No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10840.23596970706232953No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT10340.2250854954819638No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10240.2229086531658906No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10200.22203791623946137No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9900.21550738929124189No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9700.2111537046590956No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG9570.2083238096482005No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9440.20549391463730543No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8850.19265054497247383No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC8720.1898206499615787No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8290.1804602280024642No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8180.17806570145478373No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7970.1734943325910301No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT7110.154773488672801No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6540.14236548747118405No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6530.14214780323957674No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6000.13061053896438904No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC5980.13017517050117441No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5760.12538611740581346No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT5600.12190316970009643No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5240.11406653736223309No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5180.1127604319725892No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5070.11036590542490873No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4820.10492379963472585No Hit
CAGCGGGTCGGTAGACTCAGTCAGCAGGTTACGTGCATCGTAAG4720.10274695731865272No Hit
CGGGGCGACTTCACGTTGAGCAGTCTGTACGTTGCCACGCAGTT4670.10165853616061614No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG4660.10144085192900883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)