FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448860
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47561.059573140845698No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37250.8298801408011407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22200.49458628525598186No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19610.4368845519761173No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18670.4159426101679811No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18630.41505146370806045No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16360.3644789021075614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15350.34197745399456403No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14420.321258298801408No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14110.31435191373702265No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11010.2452880630931694No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10780.2401639709486254No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10520.23437151895914096No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10380.23125250634941855No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10350.230584146504478No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9680.2156574433008065No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9450.2105333511562625No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9330.20785991177650048No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8320.18535846366350311No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7940.17689257229425656No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7370.16419373524038675No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7260.16174308247560487No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6740.1501581784966359No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6090.13567704852292473No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5820.1296618099184601No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5410.12052755870427304No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5200.11584903978968944No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5030.11206166733502651No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4990.11117052087510583No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG4910.10938822795526446No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4810.10716036180546272No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4770.10626921534554203No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4650.10359577596577997No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4600.10248184289087911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)