FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423684
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA43641.0300129341679176No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41250.9736029682499221No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34320.8100376695839353No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20300.4791306728599617No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18140.42814928106796574No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17460.412099583651967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17190.4057269096779675No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15270.3604101169739712No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15120.3568697425439714No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13450.31745357388997464No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12780.30163990143597585No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10250.24192558604998063No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9970.2353168871139812No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9690.2287081881779817No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9460.22327961405198216No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9430.22257153916598219No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8970.21171439091398309No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8260.1949566186119844No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7480.1765466715759859No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7160.16899387279198647No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7120.16804977294398654No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6780.1600249242359872No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6670.15742864965398742No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5310.12532925482198998No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5100.12037273061999036No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG4950.11683235618999066No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4870.1149441564939908No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4750.11211185694999103No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4740.11187583198799105No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4550.10739135770999139No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4530.10691930778599144No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4500.1062112328999915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)