FastQCFastQC Report
Wed 31 May 2023
EGAF00007942183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432560
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14230.32897170334751247No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13870.32064915849824305No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13150.3040040687997041No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12720.2940632513408544No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11900.27510634362862957No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11430.2642407989643055No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10650.246208618457555No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10530.24343443684113186No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9850.22771407434806734No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9580.22147216571111522No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8110.18748844090993158No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7990.18471425929350843No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7930.18332716848529684No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7900.18263362308119105No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7610.17592935084150177No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG7050.16298316996486037No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6890.15928426114296282No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6300.14564453486221565No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5930.1370908082115776No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5730.13246717218420564No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5670.13108008137599408No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5640.1303865359718883No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5400.12483817273904198No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5180.11975217310893287No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5160.11928980950619568No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG5120.11836508230072128No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5120.11836508230072128No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC4940.11420380987608655No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4680.10819308304050305No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4430.10241353800628814No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4420.10218235620491954No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4360.10079526539670798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)