FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432560
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39270.9078509339744776No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30440.7037174033660071No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18860.43600887738117255No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15190.3511651562788977No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13820.31949324949140007No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12870.29753097836138337No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11720.2709450712039948No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10670.2466709820602922No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10580.24459034584797487No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10220.23626780099870537No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9360.2163861660810061No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8890.2055206214166821No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8370.19349916774551507No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8310.1921120769373035No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8210.18980025892361752No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8120.18771962271130016No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8090.1870260773071944No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7190.1662197151840207No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6940.1604401701498058No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6420.1484187164786388No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5970.13801553541705197No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5860.1354725356019974No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5840.13501017199926021No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5840.13501017199926021No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5700.13177362678009988No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA5430.12553171814314776No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5390.12460699093767338No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5380.12437580913630479No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC4910.11351026447198077No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4740.10958017384871462No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4590.10611244682818567No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4510.10426299241723691No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)