FastQCFastQC Report
Wed 31 May 2023
EGAF00007942185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448593
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG19790.44115712906799703No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18050.40236918543089173No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10540.23495685398568414No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10490.23384225790415814No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10180.22693176219869682No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8940.1992897793768516No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8890.19817518329532563No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7920.1765520193137209No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7760.17298531185283766No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6840.15247674395275898No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6380.1422224600027196No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6090.13575780272986873No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5590.12461184191460857No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4910.10945333520585475No Hit
CGCACGCAGGCCGCTTGCGACGTTAGTGATGGCCTTATTACCCG4880.10878457755693913No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4760.10610954696127671No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4620.10298867793300387No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4530.10098240498625703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)